With Penn State being made to vacate 112 wins dating back to 1998, they fall from 5th place to 13th on the all-time wins list, and Georgia gets bumped up a spot from 11 to 10.
Here is the list (PSU record hasn't been updated yet, but you can do the math):
www.cfbdatawarehouse.com/data/misc/div_ia_wins.php
The SEC has 3 teams in the top 10: Bama in 7th place, Tennessee in 8th, and UGA in 10th. LSU and Auburn are just outside at 11th and 12th, respectively.
Nearly half of the top 12 teams (5/12) on the all-time wins list are from the SEC.